PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G1NHG
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 520aa    MW: 56955.2 Da    PI: 4.6854
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G1NHGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.8e-35371422102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.....XTTSEEEEESXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.....kekiweFkhksFkkgkkel 93 
                   Fl+k+y++++d++++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+Y  +k k ++++s++     +++ weF+++ F +g+k+l
   Aradu.G1NHG  37 FLSKTYDMVDDPSTDAIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYMEQKRKIDKESSSQgfrkvDPDRWEFANEGFLRGQKHL 133
                   9********************999************************************99999999887776665449***************** PP

                   XXXXXXXXX CS
  HSF_DNA-bind  94 lekikrkks 102
                   l++i r+k 
   Aradu.G1NHG 134 LRNITRRKP 142
                   ******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3432140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-5833140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-3834140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3037140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-163760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-167587IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-1688100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDASTSGGDG GGGGSTNGAT PAPAPVPIPN ANAPPPFLSK TYDMVDDPST DAIVSWSATN  60
NSFVVWNPPE FARDLLPKYF KHNNFSSFVR QLNTYMEQKR KIDKESSSQG FRKVDPDRWE  120
FANEGFLRGQ KHLLRNITRR KPAHGHHQQS QQSHVQNSSV GACVEVGKFG LEEEVERLKR  180
DKNVLMQELV RLKQQQQTTD GQLQTMVQRL QGMEQRQQQM MSFLAKAVQS PGFFAQFVQQ  240
QNENNRRISE VNKKRRLKQE GIAETDSAAA PDGQIVKYQP LINDSAKAML RQIMKWDTSR  300
AESFSKDPDN YLIGDGSSSS SGAMDSGSSS SWTSGVTLQE VPPTSVQSSH VPITPGAPGH  360
VPSAAKPEIQ SLPQAGVPEK VTRVGASDIP SIHVPQADVI MPDLAPIDEI ESGSMLGIPE  420
DNYMAPEAGD EGFMDPDSLG VSGSFPIDFE GISPDADLDD FLGNPSIWDD LLQTPVQEDT  480
ETDIEASKVN EVQPAENGWD KTQHLDQLTK QMGHLSSEAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-25121404129Heat shock factor protein 1
5d5v_B2e-25121404129Heat shock factor protein 1
5d5u_B2e-25121404129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251258NKKRRLKQ
2252257KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201142.10.0PREDICTED: heat shock factor protein HSF8-like isoform X1
RefseqXP_016201143.10.0PREDICTED: heat shock factor protein HSF8-like isoform X1
SwissprotQ401521e-169HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLI1MMC10.0I1MMC1_SOYBN; Uncharacterized protein
STRINGGLYMA16G13400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-117heat shock transcription factor A1D